Differential expression, longitudinal trajectories &
enrichment
Each omics dataset was tested for differential expression (DE) between the different maturation stages of granulopoiesis. We split the longitudinal trajectory analysis into multiple multiple scrips that each require their own set of packages and functions.
- Differential expression
- Feature trajectory analysis
- Enrichment
Index:
Data preparation: pg2
PCA and clustering: pg3
Differential expression, longitudinal trajectories and enrichment: pg4
miRNA interactions, cell compartments and single cell integration: pg5